Insertion junction: CLIP2.045289_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.045289
Chromosome:chromosome 16
Location:3112721
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g801923 (1 of 30) PF00078//PF03372 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCATAAGCAACAGCTCGTCGTTAGCAGTGCAAAAACGATTTATCAGTG
Internal bar code:CATAATGGACCCTTCAGTGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:3562
LEAP-Seq percent confirming:22.9167
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:37
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:GCGAATGTTGCTGAGCTACG
Suggested primer 2:CGCACGGTATAGCACTTTGC