Insertion junction: CLIP2.045292_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.045292
Chromosome:chromosome 6
Location:8443392
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g308450 RAF1 (1 of 1) PTHR35299//PTHR35299:SF2 - FAMILY NOT NAMED // RUBISCO ACCUMULATION FACTOR 1, CHLOROPLASTIC-RELATED; RuBisCO accumulation factor 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCGATACCCCTTCCCCCGACGCGGGCCCTCCGTTCCCCCTCTCGCCCCT
Internal bar code:TGCTTATCTATGAGATTAACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2506
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:82
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:82

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGACCCTCAGGAGATGCT
Suggested primer 2:GTTTGGACGGGACAACAAGC