Insertion junction: CLIP2.045292_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.045292
Chromosome:chromosome 6
Location:8443408
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g308450 RAF1 (1 of 1) PTHR35299//PTHR35299:SF2 - FAMILY NOT NAMED // RUBISCO ACCUMULATION FACTOR 1, CHLOROPLASTIC-RELATED; RuBisCO accumulation factor 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGAGCGAGGGCAGGGAGCGGATGGGCGCACGGTGCGACCTGCACCGCGT
Internal bar code:GTAGACATGACGTGACAAGGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:501
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTGGACGGGACAACAAGC
Suggested primer 2:ATGGACCCTCAGGAGATGCT