Insertion junction: CLIP2.045332_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.045332
Chromosome:chromosome 16
Location:1580828
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g653700 (1 of 1) PTHR10972//PTHR10972:SF71 - OXYSTEROL-BINDING PROTEIN-RELATED // OXYSTEROL-BINDING PROTEIN 5'UTR
Cre16.g653705 (1 of 1) PTHR14273//PTHR14273:SF0 - FAMILY NOT NAMED // LYR MOTIF-CONTAINING PROTEIN 1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCGGACGGCAGGACTCCCACCCCAGCAAGTAGAGGCCCGTCTCGGGTA
Internal bar code:ATGGTGAAGAATGCGGGCCGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1334
LEAP-Seq percent confirming:90.3226
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGGAGCCTGTGGAATGTG
Suggested primer 2:TGAGCTGCGACGGAAAAGAT