Insertion junction: CLIP2.045409_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.045409
Chromosome:chromosome 3
Location:2862209
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g162333 (1 of 3) IPR000104//IPR003439//IPR003593//IPR013525//IPR027417 - Antifreeze protein, type I // ABC transporter-like // AAA+ ATPase domain // ABC-2 type transporter // P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCTGCAGCTCCCGGGCTGAGGCTGTAGCTGCTGAAGCTGTTCTGGGCCC
Internal bar code:TATTGCTCGGCAAAATGTCTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:972
LEAP-Seq percent confirming:92.5926
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:TCGTGTGCTTTCTTCCTCCC
Suggested primer 2:TCTGCTGTCGAATGTGTGCT