Insertion junction: CLIP2.045531_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.045531
Chromosome:chromosome 10
Location:6169268
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g462500 PUS16 (1 of 1) 5.4.99.42 - tRNA pseudouridine(31) synthase; RNA pseudouridine synthase intron
Cre10.g462550 (1 of 34) IPR001878 - Zinc finger, CCHC-type CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGAGCTGGGTCCGGCTATCCGTGACGACGACGCGCCGGAGGCGAAGCAG
Internal bar code:AGTGGGCTGTAAACGTTTACTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2605
LEAP-Seq percent confirming:18.5185
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:AGAACTCCTCTGCAATGGCC
Suggested primer 2:TGTACATTTCCGCCCTCACC