Insertion junction: CLIP2.045540_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.045540
Chromosome:chromosome 9
Location:6060790
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g412700 (1 of 3) PF01541 - GIY-YIG catalytic domain (GIY-YIG) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAGTGTAGGCCCGGTACGCTGTCACAAGGCCCGTCCAGAGCGCACCGC
Internal bar code:CGTAATGGGATAATTCGTGCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2263
LEAP-Seq percent confirming:68.4211
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TTAAACAGCGCTGCAACCAC
Suggested primer 2:GACCGCCCTGCATAGTCTAC