Insertion junction: CLIP2.045542_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.045542
Chromosome:chromosome 12
Location:243566
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g485150 GAP1a,GAP1,GAPC1 (1 of 2) 1.2.1.12 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) / Triosephosphate dehydrogenase; Glyceraldehyde 3-phosphate dehydrogenase, GAPC, chloroplastic intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAATTCCGGCTCCGGAAGGGCTGTTACGGAACCGCGCATGCCCTGATTGT
Internal bar code:CAGGCTCTTTGGCGGGGTATCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2040
LEAP-Seq percent confirming:96.5517
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:GTCATCCCGGAATCGAAGCT
Suggested primer 2:GAGTAGCGTCGTCGTGCATA