Insertion junction: CLIP2.045641_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.045641
Chromosome:chromosome 3
Location:5204140
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g181650 (1 of 1) PTHR20973//PTHR20973:SF0 - NON-SMC ELEMENT 1-RELATED // NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 HOMOLOG intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTCTAACGCCCCGCTGACAACCCGCCCCCCCGCGTGCTGCCACGCTGCT
Internal bar code:GGTGCTAGATACAAGAACGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:5420
LEAP-Seq percent confirming:89.6552
LEAP-Seq n confirming:52
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:ACACGACGCTGACCTGATTT
Suggested primer 2:CATGCAGTCCCTGACCACAT