Insertion junction: CLIP2.045643_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.045643
Chromosome:chromosome 16
Location:1342121
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g651801 (1 of 7) IPR000104//IPR020683 - Antifreeze protein, type I // Ankyrin repeat-containing domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCCCCAACAACACCCTGGGTGCGGCTGGTCCGCCGAGTGGTGCCGGCG
Internal bar code:TTACGCGAGGTTACGCGGCTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1871
LEAP-Seq percent confirming:56.25
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GGTTTACAGCACGTGAGGGA
Suggested primer 2:CCGCCTAGTGAGTACTGCAG