Insertion junction: CLIP2.045731_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.045731
Chromosome:chromosome 13
Location:445008
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g564850 (1 of 1) PTHR31651:SF3 - AUXIN EFFLUX CARRIER FAMILY PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTAGTTGCCTCATGCGTGTCCCGGTAAACGGCGGGTGCACGTCGCGACA
Internal bar code:GCCTGAAATGCACTTACTCGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:2817
LEAP-Seq percent confirming:73.5849
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:CGGCAAATGTCCCATGCAAA
Suggested primer 2:AGCGTTTACCCACTGGTCAG