Insertion junction: CLIP2.045755_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.045755
Chromosome:chromosome 8
Location:4440036
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g385550 (1 of 80) IPR003882 - Pistil-specific extensin-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGTATGGCAGCTGCATCATAATGTCGTACAGCAGTGTGGGGCAGTCGG
Internal bar code:TGGGTTTTCTAGTGTTCGCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1771
LEAP-Seq percent confirming:28.5714
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CAACACACAGCTGCTGACAC
Suggested primer 2:CCCCTGGCCTTTCTATTGCA