Insertion junction: CLIP2.045813_4

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.045813
Chromosome:plastome
Location:22432
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802273 2717054,ChreCp011,rpl23 (1 of 1) PTHR11620//PTHR11620:SF20 - 60S RIBOSOMAL PROTEIN L23A // 50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC; 50S ribosomal protein L23 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAAATATCCTCTATTGCCTAACCAGAATCTAGATTTTGACTACAATTGG
Internal bar code:GAGGTAAACTGGTAGCGTCCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:66
LEAP-Seq percent confirming:6.66667
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AAATAGGCAGTGGCGGTACC
Suggested primer 2:GGTACCGCCACTGCCTATTT