Insertion junction: CLIP2.046038_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.046038
Chromosome:plastome
Location:12380
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802267 ChreCp005,2716979,tufA elongation factor 1-alpha; (1 of 1) PTHR23115//PTHR23115:SF146 - TRANSLATION FACTOR // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACGTTTTAACAAAAGAAGAAGGTGGTCGTCACTCTGCTTTCATGATTG
Internal bar code:GGTGAGTCAGAACGAGTGTCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:340
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CCAAAGGGGACGTCCGTTAA
Suggested primer 2:ATGATCACAGGTGCTGCACA