Insertion junction: CLIP2.046398_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.046398
Chromosome:chromosome 16
Location:7957659
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00188039

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCGGCCAAGTCCAGGAGGTGAGGTTGTGCCGCCGGACCTTGGGCCTTGT
Internal bar code:CTTTACGGGTTTTCACTCGAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:4520
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:51
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:CAAAATTCTGCTGCGGCCTT
Suggested primer 2:GACAGGGACCCTCCACATTG