Insertion junction: CLIP2.046488_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.046488
Chromosome:chromosome 1
Location:2607143
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g015500 CGL91 (1 of 18) PTHR10774 - EXTENDED SYNAPTOTAGMIN-RELATED; Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCAACTCACTTGTTGCATCTGATAAGGCCACTCTCCAGCGCACGCCTTC
Internal bar code:TCTGGTGAGTTGGTTTCCGTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2992
LEAP-Seq percent confirming:75.5556
LEAP-Seq n confirming:68
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:90

Suggested primers for confirmation by PCR

Suggested primer 1:GCAAGCACGCAAAACAAACC
Suggested primer 2:GTAGGCAGTTTTGGTTGCGG