Insertion junction: CLIP2.046509_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.046509
Chromosome:chromosome 12
Location:8517046
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g549400 (1 of 4) PF09366 - Protein of unknown function (DUF1997) (DUF1997) intron
Cre12.g801481 (1 of 1) IPR000104//IPR003072//IPR018971 - Antifreeze protein, type I // Orphan nuclear receptor, NOR1 type // Protein of unknown function DUF1997 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCTTGCAACCCTCCGCCCTGGGCACCCTGCTAGGACCCGCCATGAATG
Internal bar code:ACACTTCGTTTCTCTCTCGCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1111
LEAP-Seq percent confirming:82.3529
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGATGTATCCTGCTCGCT
Suggested primer 2:GCCATCTCTATCCCCAGTGC