Insertion junction: CLIP2.046544_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.046544
Chromosome:chromosome 1
Location:3991796
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre01.g026150 (1 of 3) 3.4.24.59 - Mitochondrial intermediate peptidase CDS
Cre01.g026200 PPR9 PentatricoPeptide Repeat protein 9; (1 of 6) PF01535 - PPR repeat (PPR) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATCGACCCGCTTGTGTTCTGATCACTGGGCGCCCCTGGTTCGGAGTGAA
Internal bar code:TTGGTAACAGCATAAGTTACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:169
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AGCAGCTGAAACGGACATGA
Suggested primer 2:ATGACGCTTCTGGGTGAGTG