Insertion junction: CLIP2.046560_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.046560
Chromosome:chromosome 5
Location:3056074
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800572 (1 of 34) 2.4.2.41 - Xylogalacturonan beta-1,3-xylosyltransferase / Xylogalacturonan xylosyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGATGGGAGCTGGGGGCGGGGGCTCGGGTGCGGCGTGCTGGGCACGCG
Internal bar code:CCGGTGTAAGGCATTATTCAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:519
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CACACACACACACCTGCATG
Suggested primer 2:GGCAGTTCCTCAGCTGTCAA