Insertion junction: CLIP2.046615_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.046615
Chromosome:chromosome 16
Location:2653025
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g661450 HTV3 (1 of 35) K11253 - histone H3 (H3); Histone H3 variant CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGGACCTGCATGCACATGCCAGCAGTTTTGGTATGTTGGATAATGTGT
Internal bar code:TTATGGTTTTCCTTTAGGCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1766
LEAP-Seq percent confirming:28.3784
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:53
LEAP-Seq n unique pos:74

Suggested primers for confirmation by PCR

Suggested primer 1:GTCGAAGCCAGTGAGTGTGA
Suggested primer 2:GCGCCAGTTGCATATCCTTG