Insertion junction: CLIP2.046615_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.046615
Chromosome:chromosome 16
Location:2653029
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g661450 HTV3 (1 of 35) K11253 - histone H3 (H3); Histone H3 variant CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCAACCAGATGCTGCGCGAGCCCTTCCGTTGGACTGCGGAGGCACTAC
Internal bar code:GCGTAGCAGTGGAGCACGAGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:4902
LEAP-Seq percent confirming:83.4862
LEAP-Seq n confirming:91
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:109

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCCAGTTGCATATCCTTG
Suggested primer 2:GTCGAAGCCAGTGAGTGTGA