Insertion junction: CLIP2.046646_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.046646
Chromosome:chromosome 3
Location:1728979
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800300 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGTTTGACAGAGTGCCGAGGGATTTGTTATGGCAAAGACTGGAAGAGA
Internal bar code:CGTACTACCGGCGGAAGGTAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2676
LEAP-Seq percent confirming:35.9375
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:82
LEAP-Seq n unique pos:128

Suggested primers for confirmation by PCR

Suggested primer 1:GCCATGCTCTAGTGCTCGAT
Suggested primer 2:GTCACGGATTGGACGTCCTT