Insertion junction: CLIP2.046671_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.046671
Chromosome:chromosome 12
Location:1279832
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g489600 (1 of 3) IPR003029//IPR012340//IPR022967 - S1 domain // Nucleic acid-binding, OB-fold // RNA-binding domain, S1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAGCACAGCCCCACCAGCAGCGCAACGCCAATACAAAACCCTCTGCTC
Internal bar code:CAAATGGTGTAAGTGTGAAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1305
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGGTGTCATTCGCGAGTT
Suggested primer 2:AAGGGCTAAGGATTGTGGCC