Insertion junction: CLIP2.046776_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.046776
Chromosome:chromosome 10
Location:2317394
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g434400 PF6 (1 of 1) K19090 - CRISPR-associated protein Cas5t (cas5t); Flagellar central pair-associated protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGCTAGCACCAAAACGCGCACTTCTCATCTCTTCGCGCCCTTTCGAAC
Internal bar code:AGAGATCCAAGGCAGTAATTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2543
LEAP-Seq percent confirming:76.9231
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CCGCCTTCTTCTTAGCCTCC
Suggested primer 2:CAACCTGGGCTACTACTCGG