Insertion junction: CLIP2.046776_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.046776
Chromosome:chromosome 10
Location:2317430
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g434400 PF6 (1 of 1) K19090 - CRISPR-associated protein Cas5t (cas5t); Flagellar central pair-associated protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAGGTAGGTCCGGTTGCGCGGTATTTTACTTCTTGGGGTCCTAGTTCCT
Internal bar code:AGAGATCCAAGGCAGTAATTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1295
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CAACCTGGGCTACTACTCGG
Suggested primer 2:CCGCCTTCTTCTTAGCCTCC