Insertion junction: CLIP2.046804_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.046804
Chromosome:chromosome 16
Location:5983258
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g678600 (1 of 3) PTHR20961:SF0 - EGF DOMAIN-SPECIFIC O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCCCCGCAGTGTCAGCATGGGTCCCAAGCCGCATTCAATCTCCATTTAC
Internal bar code:TAATATTTTACAAGATATTATT

Confirmation - LEAP-Seq

LEAP-Seq distance:1490
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:GGAAATCGCGTTCGTTCAGG
Suggested primer 2:CGTCTCTCTACGAGCAGCTG