Insertion junction: CLIP2.046818_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.046818
Chromosome:chromosome 17
Location:4483088
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g731050 (1 of 1) PTHR12847//PTHR12847:SF5 - ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED // CCR4-ASSOCIATED FACTOR 16 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGAAATGAGCCCCGCCCCGCCCAGCACTTATCCCCATGAATAATCCCA
Internal bar code:AGACGGATGGTAGAGACTTCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1325
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTCTTCGTATGACCGGGA
Suggested primer 2:GGTGGAGAGCGATGTGTTCA