Insertion junction: CLIP2.046903_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.046903
Chromosome:plastome
Location:98457
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802306 2716993,ChreCp042,rpoB1 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit I CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGACTTGTACCAAAAAACTCACGTAAAGCCCCGTTAAATGGTTTTGTAT
Internal bar code:ATAAGCGAGATTTGATATTAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2500
LEAP-Seq percent confirming:69.2308
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:AGCTGCTTGGTCGGCTATTT
Suggested primer 2:CCCCTTCGGGCAAGTAAACT