Insertion junction: CLIP2.046954_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.046954
Chromosome:chromosome 1
Location:4162325
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g027764 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAAGCACGCTCAGGCATGACTAAGGCCCCAGCGCTGGGGCTGAGTAAG
Internal bar code:GGATAGTTTCCTTTACCTGATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1336
LEAP-Seq percent confirming:61.3636
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:AGCATGGGGTAGTTCTTGGC
Suggested primer 2:CCGTTGTGGCGTTTGACATT