Insertion junction: CLIP2.046969_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.046969
Chromosome:chromosome 9
Location:679568
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00140925

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGAGTGTAGTGGTTGTTGATATAACTGTTTGTGCGAAGGCGAATCAAA
Internal bar code:ATTGAGGGGGCATGTTTAGACC

Confirmation - LEAP-Seq

LEAP-Seq distance:2495
LEAP-Seq percent confirming:86.9565
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GCACAAGCTCAGGGTTTTGG
Suggested primer 2:GCACCCGAAACCATAATCGC