Insertion junction: CLIP2.047042_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.047042
Chromosome:chromosome 3
Location:7803118
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g203100 (1 of 1) IPR000253//IPR027417 - Forkhead-associated (FHA) domain // P-loop containing nucleoside triphosphate hydrolase 5'UTR
Cre03.g203150 (1 of 33) IPR013763 - Cyclin-like CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTTGGAGGACAAGCTGGGGCGGGAGACGTACGGCAAGCTGCTGTTGGGG
Internal bar code:CAAGACGGCGTTAATGCCTCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:583
LEAP-Seq percent confirming:76.4706
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GGACATACGTCGGCCTAGTG
Suggested primer 2:GAACAGCAACAGCAACAGCA