Insertion junction: CLIP2.047087_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.047087
Chromosome:chromosome 9
Location:3559599
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g396624 (1 of 1) IPR000104//IPR001841//IPR002110//IPR016024//IPR020683 - Antifreeze protein, type I // Zinc finger, RING-type // Ankyrin repeat // Armadillo-type fold // Ankyrin repeat-containing domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCATGCCCACGCACAACGGAGATGGGGGGGATGGTTTCGGGGTCTGGGT
Internal bar code:GCTGTCGCCCGGTCAGAGTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:284
LEAP-Seq percent confirming:27.2727
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CGACGGTGATGAGGAGGATG
Suggested primer 2:GAGAGGGTCGACAAAGTGCA