Insertion junction: CLIP2.047117_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.047117
Chromosome:chromosome 11
Location:3368192
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g476900 (1 of 1) PTHR12465//PTHR12465:SF0 - UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCTTGTATGGCACTTGCAAGGCGTTGAGAACCTGGCAGCATTCCCAACA
Internal bar code:CTAGGGTTAGCGTTCGGACCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:506
LEAP-Seq percent confirming:58.3333
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:ACACCACTCGGCGAATTCAT
Suggested primer 2:GCGACGTTTTCCTTGTGCTT