Insertion junction: CLIP2.047121_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.047121
Chromosome:chromosome 8
Location:2781100
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g373650 (1 of 24) IPR006553 - Leucine-rich repeat, cysteine-containing subtype CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCCAGCCTGTCCCGACTGCCGCCCGTGTCCTTCCTGGACCTCAACGC
Internal bar code:TGGAATACTGAGATAATATTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:203
LEAP-Seq percent confirming:38.8889
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCCTCTACACCACTCCCA
Suggested primer 2:ATCTCTTCTCGGCAGTCCCT