Insertion junction: CLIP2.047196_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.047196
Chromosome:chromosome 1
Location:8131059
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g066552 TRXf1,TRXF1 Thioredoxin f1, chloroplastic; (1 of 7) 3.5.1.52 - Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase / N-oligosaccharide glycopeptidase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTGCCCGGCTACTGCTCTCAGGTGCCACCAACGAGTCCAAGAAGCTGG
Internal bar code:CTTGGCAAATTCAGGCGGGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2601
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCCCCAATTCTTCCCCTG
Suggested primer 2:GTGTCGTTCGTTCGGCTTTC