Insertion junction: CLIP2.047233_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.047233
Chromosome:chromosome 2
Location:5824890
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800243 CDS
lncRNA_TCONS_00041141 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTGCAAAGAAACAAATGTTCCAAATTGTTCATAATATTTATAACGCAT
Internal bar code:GTTTCGGAGGAGTAATACCTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2840
LEAP-Seq percent confirming:5.08475
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:56
LEAP-Seq n unique pos:59

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTGCACGTGTTCCTGACT
Suggested primer 2:GATGACGGATGGCTGCCATA