Insertion junction: CLIP2.047233_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.047233
Chromosome:chromosome 2
Location:5824902
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800243 CDS
lncRNA_TCONS_00041141 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTTTGCACGGGACGCAGCCCGCCACCTTCCTATGAAAGCCATCCGCTC
Internal bar code:GTTTCGGAGGAGTAATACCTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1634
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GATGACGGATGGCTGCCATA
Suggested primer 2:CTCTGCACGTGTTCCTGACT