Insertion junction: CLIP2.047310_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.047310
Chromosome:chromosome 7
Location:1163462
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g321000 CYG14 (1 of 1) PF00211//PF01590 - Adenylate and Guanylate cyclase catalytic domain (Guanylate_cyc) // GAF domain (GAF); Adenylate/guanylate cyclase CDS
Cre07.g321050 (1 of 1) PTHR11772//PTHR11772:SF3 - ASPARAGINE SYNTHETASE // ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTGTTGCTGAGGTGAGAGCTTGGGTGAGAGGGACTCCCTCCCCTACAT
Internal bar code:CGGTTGTCGAGACATCAGGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2261
LEAP-Seq percent confirming:63.3333
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:TAAGCAAGTGAGGTGCAGGG
Suggested primer 2:TCGGTGCAGAGTCTCCAAAC