Insertion junction: CLIP2.047390_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.047390
Chromosome:chromosome 9
Location:519174
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre18.g748697 (1 of 2) PTHR31362//PTHR31362:SF0 - FAMILY NOT NAMED // PROTEIN E03H4.4-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGGACCGGGACTTTGCGGATTGGGATAGCAGGTTCGATTTGGTGGCTG
Internal bar code:GTGTTTTTAATACTATAATCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1612
LEAP-Seq percent confirming:97.1429
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:AGAAGTTGCGGGTTGTGGAT
Suggested primer 2:TGAGTGCTGTATGCGTGTGT