Insertion junction: CLIP2.047441_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.047441
Chromosome:chromosome 17
Location:3186178
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g721150 intron
lncRNA_TCONS_00163097 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCTAGGATGGGGAATAGCGATACTCCTTACGCCCGTCCTACGCTTCCC
Internal bar code:TTTCCTGAGTGCCCCTTCGTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1020
LEAP-Seq percent confirming:6.66667
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:42
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCATTGGGTTACAGGCAT
Suggested primer 2:TCCTTGACTCCTCAACGCAC