Insertion junction: CLIP2.047547_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.047547
Chromosome:chromosome 1
Location:5455169
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g038550 SQD2 Sulfoquinovosyldiacylglycerol synthase; (1 of 2) K06119 - sulfoquinovosyltransferase (SQD2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATACGCCCACCCTGCAGGTGAGCCTGTCCCCACCCAAGCTCCTCTCTCC
Internal bar code:GACGAACGTCCGCTTTTACTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1136
LEAP-Seq percent confirming:57.1429
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCCTTTCAAGCCTCCAGC
Suggested primer 2:GCCACCTCTTTCCCTCTCAC