Insertion junction: CLIP2.047628_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.047628
Chromosome:chromosome 17
Location:4234836
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g729600 (1 of 11) IPR001471//IPR016177//IPR031112 - AP2/ERF domain // DNA-binding domain // AP2-like ethylene-responsive transcription factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCGTCGTATTGCTCCGCCGCATCCTCCTCGCGCTCGCAGGTGGTGCCGT
Internal bar code:ACTTGCATTCTCGTTGCTAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1787
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:TTTCATCCCCTCAAACGCGA
Suggested primer 2:GGTCGACTGGGACTAGGACT