Insertion junction: CLIP2.047693_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.047693
Chromosome:chromosome 3
Location:8345363
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g199050 (1 of 1) IPR000595//IPR000719//IPR000961//IPR002290//IPR011009//IPR014710//IPR018490//IPR020635//IPR027916 - Cyclic nucleotide-binding domain // Protein kinase domain // AGC-kinase, C-terminal // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // RmlC-like jelly roll fold // Cyclic nucleotide-binding-like // Tyrosine-protein kinase, catalytic domain // Protein kinase-like domain, Apicomplexa intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCACCTCACCCCTCGGCCGCTCCCCACCCGGCCCCCGCCCCTCCCTGC
Internal bar code:CATATGTGTGGGGGGTCTACTC

Confirmation - LEAP-Seq

LEAP-Seq distance:150
LEAP-Seq percent confirming:8.69565
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGATGAGCTGGATGGAGA
Suggested primer 2:TTCCGATATCCTTGCCGCTC