Insertion junction: CLIP2.047693_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.047693
Chromosome:chromosome 3
Location:8345370
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g199050 (1 of 1) IPR000595//IPR000719//IPR000961//IPR002290//IPR011009//IPR014710//IPR018490//IPR020635//IPR027916 - Cyclic nucleotide-binding domain // Protein kinase domain // AGC-kinase, C-terminal // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // RmlC-like jelly roll fold // Cyclic nucleotide-binding-like // Tyrosine-protein kinase, catalytic domain // Protein kinase-like domain, Apicomplexa intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGTTTTAGCATGTTAGCCACCGAGCCGACGCAACGCCGTGCAAGGACC
Internal bar code:CATATGTGTGGGGGGTCTACTC

Confirmation - LEAP-Seq

LEAP-Seq distance:429
LEAP-Seq percent confirming:95.4545
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:TTCCGATATCCTTGCCGCTC
Suggested primer 2:TGGGATGAGCTGGATGGAGA