Insertion junction: CLIP2.047710_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.047710
Chromosome:chromosome 10
Location:5065608
Confidence (%):63
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00035652

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGCTCAATGCTGTCCCGCAGGCTCTCTCGTGCGCGGCGGACGTCCTCA
Internal bar code:CGGACGCTTCTTGCTGTGACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:165
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GATTGTGGGCCAACTGGGTA
Suggested primer 2:CCCGGCCCTAATCTTAGCAG