Insertion junction: CLIP2.047729_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.047729
Chromosome:chromosome 9
Location:894621
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403350 (1 of 1) IPR000357//IPR016024//IPR021133 - HEAT repeat // Armadillo-type fold // HEAT, type 2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTTGGTCTGCCAGCGTGTACCAAAGCCCGGTCCGATGAACAGCCCGCTT
Internal bar code:GGAAGGTCGGCCGGATTTTAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1764
LEAP-Seq percent confirming:54.5455
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCTCCGACACCTCCTCTA
Suggested primer 2:CAGGACACCTTGAGCGAAGT