Insertion junction: CLIP2.047731_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.047731
Chromosome:chromosome 1
Location:4360379
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g029600 (1 of 3) 1.11.2.3 - Plant seed peroxygenase / Soybean peroxygenase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGATGGTGTGTATCAAATATGAAGTGAAGTGCCGGGGGAGGGGCGTCTA
Internal bar code:ATTGGGCGTTAGGTGAGTTTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:715
LEAP-Seq percent confirming:57.1429
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGTGGTTTGAATGTGCAG
Suggested primer 2:TATGCCCCTCTCTGCCTCTT