Insertion junction: CLIP2.047767_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.047767
Chromosome:plastome
Location:186240
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802330 orf2971,ftsH,ChreCp065,2716962 ATP-dependent zinc metalloprotease; (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACGAGGGTTAAGCAATGGTACACTCATGGTGGCAAGTTCGATAAACTT
Internal bar code:TTACATATGAGAAAATCTACTA

Confirmation - LEAP-Seq

LEAP-Seq distance:114
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGTTTCTTGGTCACGGCC
Suggested primer 2:AAGCGTCGTCGTTGGTTACT