Insertion junction: CLIP2.047813_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.047813
Chromosome:chromosome 3
Location:2633438
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g160500 TSK1 (1 of 1) PTHR22594//PTHR22594:SF35 - ASPARTYL/LYSYL-TRNA SYNTHETASE // LYSINE--TRNA LIGASE; Lysyl-tRNA synthetase 3'UTR
Cre03.g160550 MTP4 Metal Transport Protein 4; (1 of 3) PTHR11562:SF21 - PROTEIN R02F11.3, ISOFORM B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTCCACCGCCGATGCCAGGACAGCATAAGAGCCCGACAACACGAACACC
Internal bar code:AGAGACTCACTGTTCCTTTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2124
LEAP-Seq percent confirming:89.0909
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:CAACTAACGCGCGAAGTAGC
Suggested primer 2:TGACGTGTTCAGGTCTTCCG