Insertion junction: CLIP2.047817_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.047817
Chromosome:chromosome 12
Location:2328867
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g508150 SRH21 (1 of 1) PTHR10799//PTHR10799:SF691 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // MYB DOMAIN-CONTAINING PROTEIN-RELATED; SNF2-related DNA/RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAGACAAGGCTGAAAGTAGTCGTCAGGGCACTCCACGCGCCTCAGAATT
Internal bar code:CCGTTATAGATCGGGTGAGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:654
LEAP-Seq percent confirming:42.8571
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CGCATGATCGACATCCTGGA
Suggested primer 2:GCAATGCCTCGAAAGCACAA